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Midterm & Final Reference · Ultra-Dense A4
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CELL STRUCTURE & FUNCTION ↗ TAP
Two domains, three kingdoms
FeatureProkaryoteEukaryote
Nucleusnone (nucleoid)membrane-bound
Organellesnonemany
Size1-10 µm10-100 µm
DNAcircularlinear, multiple chromosomes
Ribosome70S80S
Eukaryotic organelles
OrganelleFunction
NucleusDNA storage, transcription
MitochondrionATP via oxidative phos (own DNA)
Chloroplastphotosynthesis (plants, own DNA)
Ribosomeprotein synthesis
Rough ERprotein synthesis + folding
Smooth ERlipid synth, detox
Golgimodify + ship proteins
Lysosomedigestion (animals)
Endosymbiotic theory
Mitochondria and chloroplasts arose from engulfed bacteria. Evidence: own circular DNA, 70S ribosomes, double membrane, binary fission.
Membrane structure
Phospholipid bilayer (hydrophilic head, hydrophobic tail). Proteins for transport, signaling, anchoring. Fluid mosaic — components diffuse laterally.

Transport: passive (no ATP) = simple diffusion, facilitated diffusion, osmosis. Active (ATP) = pumps (Na⁺/K⁺), endocytosis, exocytosis.

⚡ EXAM TRAP — OSMOSIS DIRECTION

Water moves from low solute (high water potential) to high solute (low water potential). Cell in hypertonic solution shrivels (water leaves). Hypotonic = swells. Isotonic = no net change. Direction follows water, not solutes.

ECOLOGY ↗ TAP
Levels of organization
LevelDefinition
Populationsame species, same area
Communitymultiple populations interacting
Ecosystemcommunity + abiotic environment
Biomelarge region, similar climate + life
Biosphereall ecosystems
Population growth
Exponential: dN/dt = rN → N(t) = N₀ e^(rt)Logistic: dN/dt = rN(1 − N/K) K = carrying capacity
r-selected
Many offspring, little parental care, short life. Insects, weeds. Boom-bust populations.
K-selected
Few offspring, much parental care, long life. Whales, humans. Stable populations near K.
Species interactions
TypeEffect on AEffect on B
Mutualism++
Commensalism+0
Parasitism+
Predation+
Competition

Energy flow: producers (autotrophs) → primary consumers → secondary → tertiary. ~10% energy transfer per trophic level (rest as heat). Why food chains are short.

⚡ EXAM TRAP — CARRYING CAPACITY ISN'T MAX EVER SEEN

K is the equilibrium population the environment can sustain — populations oscillate around K, not always below. K can change (drought, fires, human impact). Don't confuse with peak observed population.

CELL CYCLE & DNA REPLICATION ↗ TAP
The cell cycle
PhaseWhat happensDuration
G1cell grows, normal function~10 hr
SDNA replication~6-8 hr
G2further growth, prep for mitosis~3-4 hr
Mmitosis + cytokinesis~1 hr
G0quiescent (non-dividing)indefinite
Mitosis stages (PMAT)
Prophase → Metaphase
Prophase: chromatin condenses, spindle forms. Metaphase: chromosomes align at equator (metaphase plate).
Anaphase → Telophase
Anaphase: sister chromatids separate to opposite poles. Telophase: nuclei reform, cytokinesis splits cell.
DNA replication: semiconservative — each new strand pairs with original
DNA replication mechanism
EnzymeFunction
Helicaseunwinds DNA
Primaselays RNA primers
DNA pol III5' → 3' synthesis
Ligaseseals Okazaki fragments
Topoisomeraserelieves supercoiling

Leading vs lagging: leading strand synthesized continuously toward fork. Lagging synthesized in discontinuous Okazaki fragments (5' → 3' rule).

⚡ EXAM TRAP — MITOSIS vs MEIOSIS

Mitosis: 1 division → 2 identical diploid cells (2n → 2n). For growth + repair. Meiosis: 2 divisions → 4 haploid cells (2n → n). For gametes. Meiosis I separates homologs; meiosis II separates sisters (like mitosis).

EVOLUTION & POPULATION GENETICS ↗ TAP
Mechanisms of evolution
MechanismEffect
Natural selectiondifferential survival/reproduction
Genetic driftrandom allele frequency change (small pops)
Gene flowmigration between populations
Mutationraw material — slow
Non-random matinge.g. sexual selection
Hardy-Weinberg equilibrium
p² + 2pq + q² = 1 where p + q = 1 (allele frequencies)

5 conditions for HWE: large pop, no mutation, no migration, random mating, no selection. None met in real populations — HWE serves as a null hypothesis against which evolution is measured.

Allele frequency arithmetic
If 16% of population shows recessive trait (q² = 0.16), then q = 0.4, p = 0.6. Heterozygotes = 2pq = 0.48 (48% carriers).
Modes of selection
Directional: shifts toward one extreme. Stabilizing: favors mean (e.g. birth weight). Disruptive: favors both extremes.

Speciation: reproductive isolation → divergence. Allopatric (geographic separation) is most common; sympatric (in same area, e.g. polyploidy in plants) is rarer.

⚡ EXAM TRAP — FITNESS ≠ STRENGTH

Fitness = reproductive success (how many offspring survive to reproduce). Not 'physically fit' or 'best at survival.' A small, sneaky organism with many offspring can be fitter than a strong one with few. Selection acts on reproductive output, not lifespan or strength alone.

HUMAN PHYSIOLOGY OVERVIEW ↗ TAP
Major systems
SystemMain organsFunction
Circulatoryheart, vessels, bloodtransport O₂, nutrients, waste
Respiratorylungs, tracheagas exchange (O₂ in, CO₂ out)
Digestivestomach, intestines, liverbreak down food, absorb nutrients
Nervousbrain, spinal cord, nervessignaling, control
Endocrineglands (pituitary, thyroid)hormones, slow signaling
ImmuneWBC, lymph nodesdefense
Excretorykidneys, bladderwaste filtration
Homeostasis — negative feedback
Blood glucose
High → pancreas releases insulin → cells uptake glucose → drops. Low → glucagon → liver releases glucose. Diabetes = broken regulation.
Body temperature
Hot → sweat + vasodilation. Cold → shivering + vasoconstriction. Set point: 37°C. Hypothalamus is the thermostat.

Immune system layers: innate (skin, inflammation, NK cells) responds in minutes. Adaptive (B + T cells) responds in days but specific. Memory cells mediate vaccine effectiveness.

Nervous vs endocrine: nerves use electrical signals, fast (ms). Endocrine uses hormones, slow (sec to days), but reaches all body cells.

⚡ EXAM TRAP — POSITIVE vs NEGATIVE FEEDBACK

Negative feedback reverses change → maintains homeostasis (most physiology). Positive feedback amplifies → reaches an end point (childbirth, blood clotting). Most homeostatic loops are negative; positive is the exception, used for processes that need to run to completion.

MENDELIAN GENETICS ↗ TAP
Mendel's laws
LawStatement
Segregationeach parent gives one allele per gene to each gamete (random)
Independent assortmentdifferent genes inherit independently (if on different chromosomes)
Dominancedominant allele masks recessive in heterozygote
Genotype: AA, Aa, aa Phenotype: dominant (AA, Aa) vs recessive (aa)
Cross types + ratios
Monohybrid Aa × Aa
Genotype: 1 AA : 2 Aa : 1 aa. Phenotype: 3 dominant : 1 recessive (the 3:1 ratio).
Dihybrid AaBb × AaBb
Phenotype ratio 9:3:3:1 (both dom : A dom B rec : A rec B dom : both rec). Independent assortment in action.
ConceptDefinition
Test crosscross unknown × homozyg recessive to reveal genotype
Incomplete dominanceheterozygote is intermediate (red × white = pink)
Codominanceboth alleles expressed (AB blood type)
Pleiotropyone gene affects multiple traits
Epistasisone gene masks another (coat color in mice)

Sex-linked: X-linked recessive shows up in males more (only 1 X). Color blindness, hemophilia. Mother carrier × father normal → 50% sons affected, 0% daughters affected (but 50% carriers).

⚡ EXAM TRAP — DIHYBRID 9:3:3:1 ASSUMES INDEPENDENT ASSORTMENT

Genes on the same chromosome are linked → don't assort independently → ratio deviates from 9:3:3:1. Recombination frequency tells how far apart they are. Always check whether genes are linked before applying the standard ratio.

MOLECULAR GENETICS — DNA → RNA → PROTEIN ↗ TAP
Central dogma
DNA →[transcription]→ RNA →[translation]→ PROTEIN
Transcription (DNA → mRNA)
StepWhat happens
1. InitiationRNA pol binds promoter (TATA box)
2. ElongationRNA pol synthesizes mRNA 5' → 3' (template read 3' → 5')
3. TerminationRNA pol falls off at terminator
4. Processing5' cap, 3' poly-A tail, splice introns out (eukaryotes only)
Translation (mRNA → protein)
Codon → amino acid
3 nucleotides per codon. Genetic code degenerate: 64 codons code for 20 AAs + start/stop. AUG = start (Met). UAA, UAG, UGA = stop (no AA).
tRNA + ribosome
tRNA carries AA, has anticodon. Ribosome reads mRNA codon-by-codon, links AAs into peptide chain.
Mutation typeEffect
Silentcodon → same AA (3rd position often)
Missensecodon → different AA
Nonsensecodon → stop (truncated protein)
Frameshiftinsertion/deletion shifts reading frame (catastrophic)

Gene regulation: prokaryotes use operons (lac, trp). Eukaryotes use enhancers, transcription factors, alternative splicing, miRNA, chromatin remodeling.

⚡ EXAM TRAP — DNA STRAND READ vs SYNTHESIZED

RNA pol reads template strand 3' → 5' while synthesizing mRNA 5' → 3'. The other DNA strand (coding strand) has the same sequence as mRNA (with T → U). Don't confuse: synthesis direction is fixed by enzyme; reading direction is opposite.

DECISION BOX — APPROACH BY KEYWORD ↗ TAP
If the question mentions…
KeywordUse § fromApproach
'prokaryote vs eukaryote'§ ①nucleus, organelles, ribosome size
'mitochondria origin'§ ①endosymbiotic theory: own DNA, 70S, double membrane
'osmosis / hyper/hypotonic'§ ①water moves to high solute; cell shrinks/swells
'active vs passive transport'§ ①active needs ATP, against gradient
'cell cycle phases'§ ②G1, S (DNA syn), G2, M (mitosis); checkpoints
'mitosis vs meiosis'§ ②1 division → 2n+2n; 2 divisions → 4 haploid
'leading vs lagging strand'§ ②5'→3' synthesis; lagging in Okazaki fragments
Punnett square / cross§ ③list parental gametes, fill grid, count phenotypes
'3:1 ratio' / 'monohybrid'§ ③Aa × Aa, 3:1 dominant:recessive
'9:3:3:1 ratio' / 'dihybrid'§ ③independent assortment, AaBb × AaBb
X-linked, sex-linked§ ③males show recessive at higher rate
'incomplete dominance / codominance'§ ③blend vs both expressed
'transcription / translation'§ ④DNA → mRNA → protein; codon table
'mutation type'§ ④silent / missense / nonsense / frameshift
'lac operon'§ ④prokaryote regulation: lactose ↑ → inducer binds repressor → transcription on
Hardy-Weinberg, p² + 2pq + q²§ ⑤find q from q²; p = 1−q; 2pq for heterozygotes
'natural selection / fitness'§ ⑤differential reproduction; selection on allele frequency
'genetic drift / bottleneck'§ ⑤random change in small populations
'speciation, allopatric'§ ⑤geographic isolation → divergence → reproductive isolation
'population growth' / 'logistic'§ ⑥r vs K, dN/dt = rN(1 − N/K)
'energy pyramid' / '10% rule'§ ⑥each trophic level loses ~90% as heat
'predator/prey, mutualism'§ ⑥+/+, +/0, +/−, −/− table
'homeostasis / negative feedback'§ ⑦regulator detects change → reverses it (insulin, sweat)
'innate vs adaptive immunity'§ ⑦innate fast non-specific; adaptive slow specific + memory
FRQ template
Define key terms. Apply the framework. Show calculations (Punnett, HWE arithmetic). Explain the WHY (mechanism), not just the WHAT.
Diagrams matter
Draw a Punnett square, an energy pyramid, a feedback loop. Visual + labels earn partial credit even when math wobbles.
⚡ EXAM TRAP — CORRELATION ≠ CAUSATION (BIO EDITION)

'Mice with high cholesterol live longer.' Could be: (a) cholesterol helps, (b) reverse cause, (c) third variable (genetics, diet). To prove (a), RCT: randomly raise cholesterol, see if lifespan increases. Same logic as in psychology.

⚡ FINAL EXAM TRAP — NAMES + DATES

BIO 101 wants the names: Mendel (1865), Darwin (1859), Hardy + Weinberg (1908), Watson + Crick (1953), Meselson + Stahl (1958). Knowing who/when earns easy MC points.

BIO 101 · Comprehensive Cram Sheet · Ultra-Dense A4
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